FAIRSharing Registry: connecting data policies, standards & databases WG

NEW: "The FAIRsharing Registry and Recommendations: Interlinking Standards, Databases and Data Policies”

These outputs are now ready for community review. Please review them and add your comments before December 10th, 2018.

Page Contents

The outputs of this WG are:

1. A registry of curated and interlinked records on
   standards (for identifying, reporting, and citing data and metadata),
   databases, repositories (and knowledge-bases) and
   data policies (from journals, publishers, funders and other organizations)
2. Related recommendations
   to guide users and the producers of standards and databases to select and describe these resources, or to recommend them in data policies

Through the FAIRsharing WG’s 18 month timeframe, we have built upon the existing BioSharing registry and transformed it into a cross-domain (i.e. not just for the life sciences), searchable network of 1100+ databases, 1000+ data standards, and 110+ journal and funder data policies. This is the FAIRsharing registry, which can be found at https://fairsharing.org.

This use cases-driven WG is a joint effort with Force11 and it is led and constituted by prospective adopters as well as technical implementers, many of whom are also leading and/or actively involved in other relevant RDA IGs and WGs, whose activities this WG complements and with which this WG will work closely. For more details, please refer to our Case Statement, found in the right-hand column.

Plans for RDA P12 Botswana

The FAIRsharing WG will be involved in a number of RDA and pre-RDA sessions.

Monday 5th November

• RDA BREAKOUT 1 11:30-13:00 BoF Introducing Research Data Management in Engineering - video and remote attendance
• RDA BREAKOUT 1 11:30-13:00 BoF GO FAIR - presentation
• RDA BREAKOUT 2 14:00-15:30 WG FAIRsharing Registry: Connecting Data Policies Standards & Databases, IG Data Policy Standardisation and Implementation: Journal Data Policy Standardization for FAIRer Data - Where We Are, What is Next - presentation
• RDA BREAKOUT 2 14:00-15:30 BoF Best Practices for Vocabulary-based Projects: Development, Standardization, Registration, Harmonization and Support - video and remote attendance

Tuesday 6th November

• SciDataCon Session 14:00-15:30 Democratising Data Publishing: A Global Perspective - Part 1 - presentation
• SciDataCon Session 16:00-17:30 Supporting FAIR data - presentation
• SciDataCon Session 16:00-17:30 Democratising Data Publishing: A Global Perspective - Part 1 - panel

Wednesday 7th November

• RDA BREAKOUT 6 16:00-17:30 G ELIXIR Bridging Force, WG FAIRsharing Registry: Connecting Data Policies, Standards & Databases, IG Agricultural Data Interest Group (IGAD), IG Biodiversity Data Integration, IG RDA/CODATA Legal Interoperability - Access and Benefits Sharing and the Nagoya Protocol - presentation

Please don't hesitate to contact us on contact@fairsharing.org if you would like to arrange to talk to us at the plenary or to invite one of our representatives to your session.

Adopters

Please note: We are gaining new adopters all the time. To see the most up-to-date version of this table, please see our communities page.

* TDWG RDA Working Group and Biodiversity Data Integration RDA IG

$ Part of RDA GEDE Coordination Group

Want to join our list of adopters? Contact us here.

Outputs and timeline

Key outputs (October 2018):

1. Introducing two new ontologies

All records in FAIRsharing are annotated with a number of ontologies, such as the NCBI taxon for species information (where appropriate) and SWO terms for licensing information. Now, we have split our user-generated domain tags into three fields, a subject/disciplines field, using our new Subject Resource Application Ontology (SRAO), a domains field, using our new Domains Resource Application Ontology (DRAO) and much smaller user-generated tags field. These two ontologies are open and have a CC-BY-SA 4.0 license.

2. Expanding content

Working with the community, we continue to add new records to FAIRsharing. Highlights include our new Chemistry Collection, curated in collaboration with IUPAC, International Virtual Observatory Alliance (IVOA) collection and Global Biodiversity Information Facility (GBIF) collection.

Key outputs (March 2018):

1. Content and curation - update

As of March 2018, we have 1168 standards, 1050 databases and 111 policies. Our aim is to ensure quality rather than quantity. A key part of this is working directly with the community, engaging the maintainers of each standard, database and policy to actively update the record for their resource on FAIRsharing. If you have not yet claimed the record for a resource that you help maintain, please head over to the FAIRsharing website and do so.

2. DOIs for Database, Standard and Policy records

Through a collaboration with the British Library and the University of Oxford’s Bodleian Library, we now have DOIs for Database, Standard and Policy records in FAIRsharing.

Each record can now be reached using its DOI, e.g.

• AGROVOC
• COSMIC
• AGU Publications Data Policy

We will be adding DOIs for our collection and recommendation records in the near future.

3. The FAIRsharing Embeddable Widget

We continue to update the widget and now have a version 1.0 available for implementation. We are working with a number of journal publishers to install the widget on their webpages to represent their data policies in an interactive, responsive table and graph. The widget can be used to represent a FAIRsharing collection or recommendation as either an interactive table or network graph.

Many thanks to Scott and the GigaScience team for rolling out the widget on their pages. It can be viewed in-situ here.

Please email contact@fairsharing.org for more information.

4. Website development

Collection Comparison Tool - collections (groups of records related to a project, programme or organisation) and recommendations (groups of records endorsed by a journal publisher's or funder's data policy) can now be compared in a pairwise fashion. This tool allows users to assess the similarity between two collections/recommendations in terms of shared repositories and/or standards, overlapping species and disciplines and more.

Key outputs (June 2017):

After extensive community feedback the BioSharing registry is renamed to be the FAIRsharing registry, to reflect the growth in databases, standards and data policies beyond the life sciences. FAIRsharing will still cover the life sciences, and is a committed ELIXIR core resource, but now also contains information on non-life science resources, across the natural sciences, humanities and social sciences.

Key outputs (March 2017):

1. Growing Adoption - join us!

Our adopters are now listed in a table on our communities page, and here on the RDA WG page. Our adopters are not individuals, but organizations or projects that in turn serve individual researchers and other stakeholders. To be an adopter, a resource/group/organisation needs to use BioSharing in their work in some way (e.g. to inform their data policy or by creating and linking to a collection), and link back to FAIRsharing from their webpages. As you can see from the table, FAIRsharing has a growing diverse list of adopters, but we're always keen to add more, so please do spread the word and let us know if you think we have missed someone off our list.

2. RDA/Force11 FAIRsharing WG outputs

The joint RDA/Force11 FAIRsharing WG is coming to the end of its 18 month time frame, but will remain an activity in the RDA community as part of the RDA ELIXIR Bridging Force Interest Group. We are currently preparing our output package for consideration by the RDA (watch this space!) This is an important step as it will increase the visibility of FAIRsharing outside of the life/biomedical/environmental science domains and encourage cross-domain and discipline collaborations.

We feature in two sections of the March 2017 RDA newsletter.

3. Content and curation - update

As of March 1st 2017, we have 674 standards and 841 databases and 94 data policies. Aiming for quality, accuracy and consistency, we have manually reviewed every single record in FAIRsharing, checking every field and relationship link. This means every record has been manually assessed within the last year. We are now in the process of contacting the maintainers and contacts for each record to ensure they are aware of this update and have added all they can to their record(s).

Key outputs (August 2016):

BioSharing is now an:

1. Informative resource

A web-based, searchable portal of 3 interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards (https://FAIRsharing.org/standards), databases (https://FAIRsharing.org/databases) and data policies (https://FAIRsharing.org/policies), also combined in an integrated view across all 3 registries (https://FAIRsharing.org/search)

Every standard and database record is annotated with a tag indicating the readiness of that resource for implementation or use (status checked with the community). Currently we have 4 indicators, that can be found in the top left of each record card (Grid view) or in the column on the right (Table view): R - ready; Dev - in development; U - status uncertain; D - deprecated. These tags also assist the Educational side, below.

2. Educational resource

From the homepage user can access the:

- Educational section. A collection of over 40 frequently asked questions that cover the whats and whys of standards, how FAIRsharing can help users navigate standards, databases and data policies in the life sciences, and how to use and cite FAIRsharing: https://fairsharing.org/educational

- Recommendations. Standards and/or databases recommended by journal or funder data policy, e.g. PLOS: https://fairsharing.org/recommendation/PLOS

- Collections. Standards and/or databases grouped by domain, species or organization, e.g. see the Biodiversity Standards, a group linked to the RDA IG: https://fairsharing.org/collection/TDWGBiodiversity

Upcoming Events

These will be listed here shortly

Activities at previous plenaries

RDA 11th Plenary, 21st-23rd March 2018, Berlin, Germany

FAIRsharing was involved in a number of RDA and pre-RDA sessions:

• Wednesday 21st March, Breakout 1 - Joint meeting: IG ELIXIR Bridging Force, IG BioDiversity Data Integration, WG FAIRsharing Registry
• Wednesday 21st March, Breakout 2 - Joint meeting: IG ELIXIR Bridging Force, IG Preservation Tools, Techniques and Policies, IG From Observational Data to Information, WG FAIRsharing Registry
• - Friday 23rd March, Breakout 8 - Joint meeting: IG Agricultural Data (IGAD), IG Data Discovery Paradigms, IG ELIXIR Bridging Force, WG FAIRsharing Registry

RDA 10th Plenary, 17th-21st September 2017, Montreal, Canada

Sunday 17th September - Monday 18th September

• Interest Group on Agricultural Data (IGAD) Pre-Plenary meeting - slides available here

Tuesday 19th September

• 11:30-13:00 Interest Group Data Discovery Paradigms
• 4:00-15:30 Interest Group Mapping the landscape
• 16:00-17:30 Joint WG FAIRsharing, IG ELIXIR Bridging Force - Slides

Wednesday 20th September

• 13:30-15:00 Joint IG Active Data Management Plans, IG Domain Repositories

Thursday 21st September

• 11:00-12:30 Working Group Data Fitness

RDA 9th Plenary, 5-7th April 2017, Barcelona, Spain

Monday 3rd - Tuesday 4th April

• Interest Group on Agricultural Data (IGAD) Pre-RDA meeting - slides available here
• EUDAT Semantic Working Group Workshop - slides available here

Wednesday 5th April

• 11:30-13:00 Breakout 1 - What's Happened in the Life Sciences - joint FAIRsharingWG & ELIXIR Bridging Force IG (Room MR12) - FAIRsharing slides available here
• 13:00-14:00 Recommendation and adoption demo (Poster room)

Thursday 6th April

• 14:00-15:30 Breakout 6 - Data policy standisation and implementation - using the life and biomedical sciences as a domain-specific example (Room MR12) - FAIRsharing slides available here
• 16:00-18:00 Plenary Session - FAIRsharing Registry - Recommendations & Outputs (Plenary room) - slides here and video here

RDA 8th Plenary and IDW, 11-17th September 2016, Denver (USA)

We co-organized and presented at the following sessions:

• SciDataCon16: Biomedical Data Stewardship: technologies for making biomedical resources FAIR, session 34 with the NIH BD2K community - slides here
• RDA
  • Thursday 15th September 2-3:30pm:
    • The data diversity problem in biomedicine, a joint session among IG Elixir Bridging Force, WG Biosharing,WG Data Type Registries,WG Metadata Standards Catalog - slides here
  • Friday 16th September 9-10am:
    • RDA output - a 10 minute review of the FAIRsharing WG, where we are with 6 months to go
  • Friday 16th September 11-12:30pm:
    • The FAIR Data Principles - the concepts and exemplars implementations, a joint session between IG ELIXIR Bridging Force and WG FAIRsharing - slides here
  • Saturday 17th September 11-12:30pm:
    • Data policies, databases and metadata standards: inform, cross-link, use, a joint session among Publishing Data IG, Metadata standards catalog WG and WG FAIRsharing - slides here

Activities pre-plenary 8

• Pre-defined Recommendations: A core-set of resources (databases and/or standards) that have been selected and recommended by relevant groups or organizations. 
• Wizard Tool (beta): The wizard guides users step-by-step through the resources captured in FAIRsharing. 
• FAIRsharing Standards Registry Survey: We have just closed our FAIRsharing Standards Registry survey, where we have assessed your needs for a registry of data/content standards in the life, environmental and biomedical sciences. We have had over 530 responses. We're now analysing the survey and will shortly publicize an executive summary of the results, along with the raw data.

Activities at Plenary 7

Where we presented

• Tues - Breakout 3: Joint meeting IG ELIXIR Bridging Force and WG FAIRsharing Registry.
• Update on the FAIRsharing WG activities

Activities pre-plenary 7

To prioritize FAIRsharing registry's content and capabilities, in a way most appropriate to your needs, we have run a 10 questions survey and received 530 replies!

Here you can see a 3 slides update on our progresses to date.

Activities at RDA Plenary 6

Presentations

Thank-you for your feedback at the 6th Plenary meeting in Paris. It was great to catch up with everyone and to hear about the innovative and challenging work everyone is doing. If you didn’t manage to catch us at the meeting, our slides and our leaflet are available on Slideshare, as follows:

• WG RDA/WDS Publishing Data Workflows (10 minute presentation)
• FAIRsharing WG Joint Session (20 minute presentation)
• A leaflet detailing FAIRsharing and some of our new features

Where we presented

• Wed - Working Meeting Session 1
  • RDA/WDS Publishing Data Workflows
• Thur - Working Meeting Session 6
  • "Joint meeting of IG Metadata, WG Metadata Standards Catalog & WG FAIRsharing Registry: Connecting data policies, standards & databases in life sciences"
• Fri - Working Meeting Session 8 and 9
  • "Joint meeting of IG ELIXIR Bridging Force & WG FAIRsharing Registry: Life Sciences and Sensitive Data"
  • "Joint meeting of IG Domain Repositories, IG Agriculture Data Interest Group (IGAD), WG FAIRsharing Registry, IG RDA/CODATA Materials Data, Infrastructure & Interoperability & WG Wheat Data Interoperability"

Activities pre-RDA plenary 6 

Help us prioritize improvements to FAIRsharing's capabilities as a Standards Information Resource, in a way most appropriate to your needs. ​Take a few minutes to answer few questions, please!

Activities at RDA Plenary 5

• Scope and role for FAIRsharing in the Environment-related Interest and Working Groups - Plenary Session.
• Role and participation of FAIRsharing in NIH and ELIXIR related initiatives presented at the BoF on Biomedical Data.

Activities at RDA Plenary 4

• Overview of the draft FAIRsharing WG case statement at ELIXIR IG breakout.

Activities at RDA Plenary 3

• Idea for the FAIRsharing WG presented during the RDA-WDS Certification of Digital Repositories IG.

Events we have attended and presented at

ELIXIR All Hands Meeting, 4-7th June, Berlin, Germany.

Supporting FAIR exchange of chemical data through standards development, IUPAC & CODATA workshop, 16-17th July, Amsterdam, Netherlands - slides here

European Open Science Cloud Pilot All Hands (Mar 8-9, 2018), Pisa, Italy - details

ELIXIR Innovation and SME Forum (Jan 24-25th, 2018), Wellcome Genome Campus, UK - details

RDA EU Data Innovation Forum (Jan 30, 2018), Brussels, Belgium - details

Keynote - International Workshop on Sharing, Citation and Publication of Scientific Data across Disciplines (Dec, 2017), Joint Support-Center for Data Science Research (DS), Tokyo, Japan - FAIRsharing.org - describing and connecting standards, repositories and policies across disciplines - slides here

Invited seminar - NBDC (Dec, 2017), Japan Science and Technology Agency, Tokyo, Japan - FAIRsharing.org - interlinking standards, repositories and policies - slides here

CODATA Data Standards (Nov, 2017), The Royal Society, London, UK

European Open Science Cloud Pilot Data Interoperability Technical Workshop (Oct, 2017), Wellcome Genome Campus, UK - Slides

BioSchemas and Schema.org workshop (Oct, 2018), Wellcome Genome Campus, UK

ELIXIR All Hands Meeting (Mar 21-23, 2017), Rome (IT)

BioSchemas and schema.org workshop (Mar 6-8, 2017), Wellcome Genome Campus, Cambridge (UK)

International Digital Curation Conference - DMP workshop (Feb 2017), Edinburgh, Scotland (UK)

ELIXIR Interoperability Platform (Jan 2017), Amsterdam (NL)

NIH BD2K All Hands (Dec 2016), DC (USA)

NETTAB/CHARME workshop (Oct 25-26, 2016) Rome (IT) - Reproducibility, standards and SOP in bioinformatics - slides here

ECCB (Sept 6, 2016) The Hague (NL) ELIXIR talk 11 - The FAIRsharing registry: mapping the landscape of standards and database resources in the life sciences - slides here

CHARME workshop - (June 22, 2016) Warsaw (PL) - a presentation on FAIRsharing at the kick-off COST-CHARME workshop on Standards - slides here

ISB2016 Conference - Geneva (CH) where we presented a poster on the FAIRsharing database registry (Tuesday 12th April) and ran a workshop on FAIRsharing, community curation and the BioDBcore guidelines (Wednesday 13th April)

UKON2016 Conference - Newcastle (UK) for a short talk on FAIRsharing on Thursday 14th April

FORCE2016 Conference - Portland (OR) at the Propelled by FORCE session on Tuesday April 19th at 10am