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Homepage Forums RDA COVID-19 Main Forum RDA COVID-19 Posts Re: [rda-covid19] RDA COVID Group – some things to note Re: [rda-covid19] RDA COVID Group – some things to note

#130096

Dear all,
nice to meet you, as well. I am Director of the Finnish Social Science Data Archive (FSD) – sister organization to Swedish National Data Service.
In case you are wondering why, on earth, I joined this group: My background is in sociology, and this situation really puts my sociological imagination to overload, so to say. I expect a lot of social sciences and humanities COVID19 data to be gathered in the coming months, and given the economic and social results, in the coming years. So not clinical research data nor epidemiological or omics data, are my focus. Yet, I feel it may prove useful to at least see, what this group is working on and how GPPR aspects are handled in the guidelines.
Best,
Helena
– Show quoted text -From: ***@***.***-groups.org
Sent: torstai 26. maaliskuuta 2020 15.59
To: ***@***.***-groups.org
Subject: Re: [rda-covid19] Re: [rda-covid19] RDA COVID Group – some things to note
Hi all,
My name is Pieter Heyvaert and I’m a development lead and developer advocate at Ghent University – IDLab, imec. In our lab we do research to make knowledge shareable and understandable on the Web. We also provide the corresponding tools for that. In the context of COVID-19 we believe that it is super important to make existing and future research easily shareable and understandable by other parties, including humans and machines.
As our first effort we created a Knowledge Graph based on the 40000 scholarly articles described in a public dataset available on Kaggle. The Knowledge Graph contains all of the information that is present in the CSV & JSON: author information, content information and meta information. Moreover, it contains relations between the different entities, such as citations between papers and so on and extra information on different entities such as journals, research institutions and countries. More information can be found at the links below.
A Comunica instance to perform queries can be found here: https://query-covid19.linkeddatafragments.org/
The code that was used to map the structured data to RDF can be found here: http://www.github.com/GillesVandewiele/COVID-KG/
The Knowledge Graph is available on Kaggle: https://www.kaggle.com/group16/covid19-literature-knowledge-graph
A notebook on how to work with RDF data in Python: https://www.kaggle.com/group16/covid-19-knowledge-graph-starter
A notebook on working with embeddings: https://www.kaggle.com/group16/covid-19-knowledge-graph-embeddings
Kind regards
Pieter Heyvaert
Ghent University, IDLab – imec
@HeyPieter
On 26.03.20 14:42, Gustav Nilsonne via RDA-COVID19 wrote:
Dear all,
Nice to meet you all. I am a researcher in neuroscience, and I also work with the Swedish National Data Service as a “domain specialist” for medical data.
Best wishes, Gustav
Gustav Nilsonne, MD, PhD
Researcher in neuroscience and meta-science
Coordinator of Data Domain Specialists with the Swedish National Data Service
Karolinska Institutet
Department of Clinical Neuroscience
Nobels väg 9
171 77 Stockholm
***@***.***
+46 (0) 736-798 743
Swedish National Data Service
snd.gu.se
________________________________
From: ***@***.***-groups.org on behalf of e.sartini via RDA-COVID19
Sent: Thursday, 26 March 2020 14:38
To: RDA-COVID19
Subject: Re: [rda-covid19] RDA COVID Group – some things to note
Dear All,
nice to meet you! I am a researcher and legal consultant for CyberEthics Lab., an Italian SME active (inter alia) in EU Founded Projects. My field of expertise is EU data protection, and I am more than thrilled to help you and provide my assistance where it possible.
Best wishes,
Elena Sartini
[https://ci6.googleusercontent.com/proxy/5MSQkxPiqycVkpcMWkyIXGE2dmFH_B7U
Researcher & Legal Consultant
Via Antonio Salandra, 18 – 00187 Rome, Italy
+39 333 6107312
http://www.cyberethicslab.com

Full post: https://www.rd-alliance.org/group/rda-covid19/post/rda-covid-group-some-
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När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI kommer att behandla dina personuppgifter. Här finns information om hur KI behandlar personuppgifter.
Sending email to Karolinska Institutet (KI) will result in KI processing your personal data. You can read more about KI’s processing of personal data here.

Full post: https://www.rd-alliance.org/group/rda-covid19/post/re-rda-covid19-rda-co
Manage my subscriptions: https://www.rd-alliance.org/mailinglist
Stop emails for this post: https://www.rd-alliance.org/mailinglist/unsubscribe/68791
Dear all,
nice to meet you, as well. I am Director of the Finnish Social Science Data Archive (FSD) – sister organization to Swedish National Data Service.
In case you are wondering why, on earth, I joined this group: My background is in sociology, and this situation really puts my sociological imagination to overload, so to say. I expect a lot of social sciences and humanities COVID19 data to be gathered in the coming months, and given the economic and social results, in the coming years. So not clinical research data nor epidemiological or omics data, are my focus. Yet, I feel it may prove useful to at least see, what this group is working on and how GPPR aspects are handled in the guidelines.
Best,
Helena
From: ***@***.***-groups.org
Sent: torstai 26. maaliskuuta 2020 15.59
To: ***@***.***-groups.org
Subject: Re: [rda-covid19] Re: [rda-covid19] RDA COVID Group – some things to note
Hi all,
My name is Pieter Heyvaert and I’m a development lead and developer advocate at Ghent University – IDLab, imec. In our lab we do research to make knowledge shareable and understandable on the Web. We also provide the corresponding tools for that. In the context of COVID-19 we believe that it is super important to make existing and future research easily shareable and understandable by other parties, including humans and machines.
As our first effort we created a Knowledge Graph based on the 40000 scholarly articles described in a public dataset available on Kaggle. The Knowledge Graph contains all of the information that is present in the CSV & JSON: author information, content information and meta information. Moreover, it contains relations between the different entities, such as citations between papers and so on and extra information on different entities such as journals, research institutions and countries. More information can be found at the links below.
A Comunica instance to perform queries can be found here: https://query-covid19.linkeddatafragments.org/
The code that was used to map the structured data to RDF can be found here: http://www.github.com/GillesVandewiele/COVID-KG/
The Knowledge Graph is available on Kaggle: https://www.kaggle.com/group16/covid19-literature-knowledge-graph
A notebook on how to work with RDF data in Python: https://www.kaggle.com/group16/covid-19-knowledge-graph-starter
A notebook on working with embeddings: https://www.kaggle.com/group16/covid-19-knowledge-graph-embeddings
Kind regards
Pieter Heyvaert
Ghent University, IDLab – imec
@HeyPieter
On 26.03.20 14:42, Gustav Nilsonne via RDA-COVID19 wrote:
Dear all,
Nice to meet you all. I am a researcher in neuroscience, and I also work with the Swedish National Data Service as a “domain specialist” for medical data.
Best wishes, Gustav
Gustav Nilsonne, MD, PhD
Researcher in neuroscience and meta-science
Coordinator of Data Domain Specialists with the Swedish National Data Service
Karolinska Institutet
Department of Clinical Neuroscience
Nobels väg 9
171 77 Stockholm
***@***.***
+46 (0) 736-798 743
Swedish National Data Service
snd.gu.se
– Show quoted text -From: ***@***.***-groups.org on behalf of e.sartini via RDA-COVID19
Sent: Thursday, 26 March 2020 14:38
To: RDA-COVID19
Subject: Re: [rda-covid19] RDA COVID Group – some things to note
Dear All,
nice to meet you! I am a researcher and legal consultant for CyberEthics Lab., an Italian SME active (inter alia) in EU Founded Projects. My field of expertise is EU data protection, and I am more than thrilled to help you and provide my assistance where it possible.
Best wishes,
Elena Sartini
[https://ci6.googleusercontent.com/proxy/5MSQkxPiqycVkpcMWkyIXGE2dmFH_B7U
Researcher & Legal Consultant
Via Antonio Salandra, 18 – 00187 Rome, Italy
+39 333 6107312
http://www.cyberethicslab.com

Full post: https://www.rd-alliance.org/group/rda-covid19/post/rda-covid-group-some-
Manage my subscriptions: https://www.rd-alliance.org/mailinglist
Stop emails for this post: https://www.rd-alliance.org/mailinglist/unsubscribe/68732
När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI kommer att behandla dina personuppgifter. Här finns information om hur KI behandlar personuppgifter.
Sending email to Karolinska Institutet (KI) will result in KI processing your personal data. You can read more about KI’s processing of personal data here.

Full post: https://www.rd-alliance.org/group/rda-covid19/post/re-rda-covid19-rda-co
Manage my subscriptions: https://www.rd-alliance.org/mailinglist
Stop emails for this post: https://www.rd-alliance.org/mailinglist/unsubscribe/68791