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Homepage Forums RDA COVID-19 Main Forum RDA COVID-19 Posts Ontolologies/subjects for COVID data discovery? Ontolologies/subjects for COVID data discovery?

#129678

Katie Hannan
Member

Or some of these?
* Medical Subject Headings (MeSH): https://meshb.nlm.nih.gov/record/ui?ui=D017934
* International Classification of Diseases
* https://icd.who.int/browse11/l-m/en#/http%3a%2f%2fid.who.int%2ficd%2fent
* Emergency use ICD codes for COVID-19 disease outbreak
* SNOMED-CT
* https://confluence.ihtsdotools.org/display/snomed/SNOMED%2BCT%2BCoronavi
* “Human coronavirus” (the organism) in SNOMED-CT, code = 84101006, and more narrowly, “SARS-CoV-2 (Severe acute respiratory syndrome coronavirus 2)”, code = 840533007
* “Coronavirus infection” (the disease) in SNOMED-CT, code = 186747009, and more narrowly, “COVID-19”, code = 840539006.
* Bioportal – Coronavirus Infection Disease Ontology https://bioportal.bioontology.org/ontologies/CIDO?p=summary
* National Institute of Health (USA): https://bioportal.bioontology.org/ontologies/NCIT?p=classes&conceptid=ht
* EMBL-EBI Ontology Lookup Service – http://purl.obolibrary.org/obo/DOID_0080600
Katie Hannan
Data Librarian | Research Data Support
CSIRO, Waite, SA
E ***@***.*** T +61 8 8303 8608
data.csiro.au | ORCiD: 0000-0002-5689-4133
From: on behalf of Rob Hooft via RDA-COVID19
Reply-To: “***@***.***
Date: Saturday, 8 August 2020 at 06:59
To: “***@***.***
, RDA-COVID19
Subject: Re: [rda-covid19] Ontolologies/subjects for COVID data discovery?
Pascal,
You may want to check out the Vodan ontology: https://vodan-ontology.github.io/
This was made to support a semantically interoperable version of the WHO Covid-19 CRF.
Rob

Rob W.W. Hooft || Skype: robhooft || Phone: +31 6 27034319 || @rwwh
Programme Manager Data Stewardship @ Dutch Techcentre for Life Sciences (DTL) http://www.dtls.nl/
On 7 Aug 2020, at 23:04, kulnor via RDA-COVID19 wrote:
All:
We’re looking to establish a short list of subjects/concepts/topics to be used for COVID-19 data discovery.
This can be directly related to COVID (like cases, deaths, tests, policies) or around contextual data (demographics, labor force, business services closure/reopening, etc.). Anyone working on this or can point us to potential resources?
thanks
*P

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